Thank you for your advice! The boot currently feels tolerable without any heat molding to the shell nor the liner. I spoke with my boot fitter and he was advocating that the actual skiing scenario is different from that during the liner molding process, so he recommends using my own body heat to mold the liners while skiing. What do you think about this?
Whether the heat comes from your body heat or from a hot air blower, the foam doesn't know where the heat comes from and it doesn't care. Given that your body temperature is lower than the hot air blower, you need to wear the liner more often and break it in more to get it to fit & shape more like your foot. It generally takes about 10-15 of skiing for this to really happen. Be aware that you might not enjoy that break-in period, but that is something I can't answer for you.
A controlled and guided heat molding process in the hands of a competent boot-fitter will result in your fit going into your liner before you ski it. This means you will have a comfortable boot from day 1 and generally without a break-in period assuming all other aspects of the boot fit you correctly. I always recommend this route, unless the skier is absolutely in love with the out-of-the-box fit (there are few reasons for introducing change when someone is already happy with how the boot feels).
Some boot-fitters think that heat molding a liner will prematurely break it down or compromise its lifespan. That may have been true with some liners 15 years ago, but with Atomic's liners, you do them no disservice by properly heat molding them.